This version implements these new features:

  • When running ‘sandy transcriptome’ save transcript counts and gene counts into separated files;
  • Use GNU/GSL RNG and Randist for randlux algorithm;
  • Update the database with GTEx version 8 expression patterns;
  • Enable persistent storage of sandy db in docker;
  • Uppercase all FASTA bases;
  • Apply NNN blacklist filter.

Get the code

Clone the repository for this version:

$ git clone --single-branch --branch "v0.24" https://github.com/galantelab/sandy.git

Install from CPAN

Install this version with cpanm:

# cpanm App::Sandy~"== 0.24"

For more details on installation, go to installation page.

Documentation

See the complete documentation for this version: manual