This version implements these new features:

  • Implementation of structural variations;
  • New variation database;
  • Simulate reads adding fusions from COSMIC and SNVs/Indels from NA12878 (1KGP);
  • Improved way to record your own experimental data to the datasets entries;
  • Add bash/zsh completions.

Get the code

Clone the repository for this version:

$ git clone --single-branch --branch "v0.19" https://github.com/galantelab/sandy.git

Install from CPAN

Install this version with cpanm:

# cpanm App::Sandy~"== 0.19"

For more details on installation, go to installation page.

Documentation

See the complete documentation for this version: manual