This version implements these new features:

  • Several ways to customize the reads’ identifiers in the fastq files on output;
  • Ready to use built-in datasets for quality-profile of sequencing, based on experimental data from several platforms (e.g. Ilumina HISeq);
  • Ready to use datasets for 54 tissue specific expression-matrices from GTEx (Xena Project).

Get the code

Clone the repository for this version:

$ git clone --single-branch --branch "v0.18" https://github.com/galantelab/sandy.git

Install from CPAN

Install this version with cpanm:

# cpanm App::Sandy~"== 0.18"

For more details on installation, go to installation page.

Documentation

See the complete documentation for this version: manual